A. Azad, G. A. Pavlopoulos, C. A. Ouzounis, N. C. Kyrpides, and A. Buluç, "HipMCL: A high-performance parallel implementation of the Markov clustering algorithm for large-scale networks," Nucleic Acids Research (NAR), 2018.
A. Azad, G. Ballard, A. Buluç, J. Demmel, L. Grigori, O. Schwartz, S. Toledo, and S. Williams, "Exploiting multiple levels of parallelism in sparse matrix-matrix multiplication," SIAM Journal on Scientific Computing, vol. 38, no. 6, pp. C624--C651, 2016.
A. Buluç and J. R. Gilbert, "Parallel sparse matrix-matrix multiplication and indexing: Implementation and experiments," SIAM Journal on Scientific Computing, vol. 34, no. 4, pp. C170--C191, 2012.
A. Buluç and J. R. Gilbert, "The Combinatorial BLAS: Design, implementation, and applications," The International Journal of High Performance Computing Applications, vol. 25, no. 4, pp. 496--509, 2011.
Articles in conference proceedings
A. Tripathy, K. A. Yelick, and A. Buluç, "Reducing Communication in Graph Neural Network Training," in Proceedings of the 2020 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis, SC'20, 2020.
E. Georganas, R. Egan, S. Hofmeyr, E. Goltsman, B. Arndt, A. Tritt, A. Buluç, L. Oliker, and K. A. Yelick, "Extreme scale de novo metagenome assembly," in Proceedings of the International Conference for High Performance Computing, Networking, Storage, and Analysis (SC'18), 2018, pp. 10.
H. M. Aktulga, A. Buluç, S. Williams, and C. Yang, "Optimizing sparse matrix-multiple vectors multiplication for nuclear configuration interaction calculations," in Parallel and Distributed Processing Symposium, 2014 IEEE 28th International, 2014, pp. 1213--1222.
E. Georganas, A. Buluç, J. Chapman, L. Oliker, D. Rokhsar, and K. A. Yelick, "Parallel de bruijn graph construction and traversal for de novo genome assembly," in Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, 2014, pp. 437--448.
A. Buluç, E. Duriakova, A. Fox, J. R. Gilbert, S. Kamil, A. Lugowski, L. Oliker, and S. Williams, "High-Productivity and High-Performance Analysis of Filtered Semantic Graphs," in Proceedings of the IPDPS, 2013, pp. 237--248.
A. Buluç and K. Madduri, "Parallel breadth-first search on distributed memory systems," in Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis, 2011, pp. 65.
A. Buluç, J. T. Fineman, M. Frigo, J. R. Gilbert, and C. E. Leiserson, "Parallel sparse matrix-vector and matrix-transpose-vector multiplication using compressed sparse blocks," in Proceedings of the twenty-first annual symposium on Parallelism in algorithms and architectures, 2009, pp. 233--244.