Book chapters or sections

• J. M. Carmena, "Case study: Cortical control of neuroprosthetic devices," in Wearable Robots: Biomechatronic Exoskeletons, J. L. Pons, Ed., Hoboken, NJ: Wiley, 2008, pp. 115-117.
• H. Peremans, R. Mueller, J. M. Carmena, and J. C. T. Hallam, "Biomimetic platform to study perception in bats," in Sensor Fusion and Decentralized Control in Robotic Systems III, G. T. McKee and P. S. Schenker, Eds., Proceedings of SPIE, Vol. 4196, Bellingham, WA: SPIE -- Society of Photo-Optical Instrumentation Engineers, 2000, pp. 168-179.

Articles in journals or magazines

• M. Shanechi, A. Orsborn, H. Moorman, S. Gowda, S. Dangi, and J. M. Carmena, "Rapid control and feedback rates in the sensorimotor pathway enhance neuroprosthetic control," Nature Communications, Jan. 2017.
• M. Shanechi, A. Orsborn, and J. M. Carmena, "Robust brain-machine interface design using optimal feedback control modeling and adaptive point process filtering," PLoS Computational Biology, May 2016.
• D. Seo, R. Neely, K. Shen, S. U, E. Alon, J. M. Rabaey, J. M. Carmena, and M. Maharbiz, "Wireless recording in the peripheral nervous system with ultrasonic neural dust," Neuron, vol. 91, pp. 529-539, April 2016.
• R. Muller, H. Le, W. Li, P. Ledochowitsch, S. Gambini, T. Bjorninen, A. Koralek, J. M. Carmena, M. Maharbiz, E. Alon, and J. M. Rabaey, "A minimally invasive 64-channel wireless uECOG implant," Solid-State Circuits, IEEE Journal of, vol. 50, no. 1, pp. 344--359, 2015.
• D. Seo, J. M. Carmena, J. M. Rabaey, M. Maharbiz, and E. Alon, "Model validation of untethered, ultrasonic neural dust motes for cortical recording," Journal of neuroscience methods, 2014.
• A. Orsborn, H. Moorman, S. Overduin, M. Shanechi, D. Dimitrov, and J. M. Carmena, "Closed-loop decoder adaptation shapes neural plasticity for skillful neuroprosthetic control," Neuron, vol. 82, pp. 1-14, June 2014.
• K. Clancy, A. Koralek, R. Costa, D. Feldman, and J. M. Carmena, "Volitional modulation of optically recorded calcium signals during neuroprosthetic learning," Nature Neuroscience, vol. 17, no. 6, pp. 807-810, Feb. 2014.
• D. Seo, J. M. Carmena, J. M. Rabaey, E. Alon, and M. Maharbiz, "Neural dust: an ultrasonic, low power solution for chronic brain-machine interfaces," arXiv preprint arXiv:1307.2196, 2013.
• A. Koralek, K. Ganguly, and J. M. Carmena, "Temporally precise cell-specific coherence develops in corticostriatal networks during learning," Neuron, vol. 79, no. 5, pp. 865-87, Oct. 2013.
• S. Dangi, A. Orsborn, H. Moorman, and J. M. Carmena, "Design and analysis of closed-loop decoder adaptation algorithms for brain-machine interfaces," Neural Computation, vol. 25, pp. 1693–1731, May 2013.
• R. Canolty, K. Ganguly, and J. M. Carmena, "Task-dependent changes in cross-level coupling between single neurons and multi-scale network activity," PLoS Computational Biology, vol. 8, no. 12, June 2012.
• A. Koralek, X. Jin, J. Long, R. Costa, and J. M. Carmena, "Corticostriatal plasticity is necessary for learning intentional neuroprosthetic skills," Nature, vol. 483, no. 7389, pp. 331-335, March 2012.
• K. So, A. Koralek, K. Ganguly, M. Gastpar, and J. M. Carmena, "Assessing functional connectivity of neural ensembles using directed information," Journal of Neural Engineering, vol. 9, no. 2, Jan. 2012.
• S. Venkatraman and J. M. Carmena, "Active sensing of target location encoded by cortical microstimulation.," IEEE Transactions on Neural Systems and Rehabilitation Engineering, vol. 19, no. 3, pp. 317-324, June 2011.
• K. Ganguly, D. F. Dimitrov, J. D. Wallis, and J. M. Carmena, "Reversible large-scale modification of cortical networks during neuroprosthetic control," Nature Neuroscience, vol. 14, pp. 662-667, March 2011.
• R. Heliot, K. Ganguly, J. Jimenez, and J. M. Carmena, "Learning in closed-loop brain-machine interfaces: modeling and experimental validation," IEEE Transactions on Systems, Man and Cybernetics, part B: Cybernetics, vol. 40, no. 5, pp. 1387-1397, Oct. 2010.
• R. Canolty, K. Ganguly, S. Kennerley, C. Cadieu, K. Koepsell, J. Wallis, and J. M. Carmena, "Oscillatory phase coupling coordinates anatomically-dispersed functional cell assemblies," PNAS, Sep. 2010.
• R. Heliot, A. Orsborn, K. Ganguly, and J. M. Carmena, "System architecture for stiffness control in brain-machine interfaces," IEEE Transactions on Systems, Man and Cybernetics, part A: Systems and Humans, vol. 40, no. 4, pp. 732-742, July 2010.
• S. Venkatraman, X. Jin, R. Costa, and J. M. Carmena, "Using inertial sensors to investigate neural correlates of behavior in freely behaving rodents," Journal of Neurophysiology, vol. 104, pp. 569-575, April 2010.
• K. Ganguly, L. Secundo, G. Ranade, A. Orsborn, E. Chang, D. Dimitrov, J. Wallis, N. Barbaro, R. Knight, and J. M. Carmena, "Cortical representation of ipsilateral arm movements in monkey and man," Journal of Neuroscience, vol. 29, pp. 12948-12956, Nov. 2009.
• K. Ganguly and J. M. Carmena, "Emergence of a stable cortical map for neuroprosthetic control," PLoS Biology, July 2009.
• S. Venkatraman and J. M. Carmena, "Behavioral modulation of stimulus-evoked oscillations in barrel cortex of alert rats," Frontiers in Integrative Neuroscience, May 2009.
• S. Venkatraman, K. Elkabany, J. D. Long, Y. Yao, and J. M. Carmena, "A system for neural recording and closed-loop intracortical microstimulation in awake rodents," IEEE Transactions on Biomedical Engineering, Jan. 2009.
• K. Ganguly, E. B. torres, J. V. Jose, and J. M. Carmena, "From multiple neural cortical networks to motor mechanical behavior: The importance of inherent learing over separable space-time length scales," BMC Neuroscience, vol. 9, no. Suppl. 1, pp. P70, July 2008.
• H. K. Kim, J. M. Carmena, S. J. Biggs, T. L. Hanson, M. A. L. Nicolelis, and M. A. Srinivasan, "The muscle activation method: An approach to impedance control of brain-machine interfaces through a musculoskeletal model of the arm," IEEE Trans. Biomedical Engineering, vol. 54, no. 8, pp. 1520-1529, Aug. 2007.
• M. Zacksenhouse, M. A. Lebedev, J. M. Carmena, J. E. O'Doherty, C. S. Henriquez, and M. A. L. Nicolelis, "Cortical modulations increase in early sessions with brain-machine interface," PLoS One, vol. 2, no. 7, pp. e619, July 2007.
• H. K. Kim, S. J. Biggs, D. W. Schloerb, J. M. Carmena, M. A. Lebedev, M. A. L. Nicolelis, and M. A. Srinivasan, "Continuous shared control for stabilizing reaching and grasping with brain-machine interfaces," IEEE Trans. Biomedical Engineering, vol. 53, no. 6, pp. 1164-1173, June 2006.
• S. Kim, J. C. Sanchez, Y. N. Rao, D. Erdogmus, J. M. Carmena, M. A. Lebedev, M. A. L. Nicolelis, and J. C. Principe, "A comparison of optimal MIMO linear and nonlinear models for brain-machine interfaces," J. Neural Engineering, vol. 3, no. 2, pp. 145-161, June 2006.
• R. Gutierrez, J. M. Carmena, M. A. L. Nicolelis, and S. Simon, "Orbitofrontal ensemble activity monitors licking and distinguishes among natural rewards," J. Neurophysiology, vol. 95, no. 1, pp. 119-133, Jan. 2006.
• J. M. Carmena, "Brain-machine interfaces: A novel paradigm for the study of learning and adaptation," Artificial Intelligence and Simulation of Behavior (AISB) Quarterly, vol. 122, pp. 3/9, 2005.
• J. M. Carmena, M. A. Lebedev, C. S. Henriquez, and M. A. L. Nicolelis, "Stable ensemble performance with single-neuron variability during reaching movements in primates," Journal of Neuroscience, vol. 25, no. 46, pp. 10712-10716, Nov. 2005.
• M. A. Lebedev, J. M. Carmena, J. E. O'Doherty, M. Zacksenhouse, C. S. Henriquez, J. C. Principe, and M. A. L. Nicolelis, "Cortical ensemble adaptation to represent velocity of an artificial actuator controlled by a brain-machine interface," J. Neuroscience, vol. 25, no. 19, pp. 4681-4693, May 2005.
• J. M. Carmena, "Brain versus machine control," Public Library of Science Biology, vol. 2, no. 12, pp. 2027-2028, Dec. 2004.
• P. G. Patil, J. M. Carmena, M. A. L. Nicolelis, and D. A. Turner, "Ensemble recordings of human subcortical neurons as a source of motor control signals for a brain-machine interface," Neurosurgery, vol. 55, no. 1, pp. 27-38, Aug. 2004.
• J. M. Carmena and J. C. T. Hallam, "The use of Doppler in sonar-based mobile robot navigation: Inspirations from biology," Information Sciences: Bio-Inspired Systems, vol. 161, no. 1-2, pp. 71-94, June 2004.
• C. A. Bossetti, J. M. Carmena, M. A. L. Nicolelis, and P. D. Wolf, "Transmission latencies in a telemetry-linked brain-machine interface," IEEE Trans. Biomedical Engineering, vol. 51, no. 6, pp. 919-924, June 2004.
• J. C. Sanchez, J. M. Carmena, M. A. Lebedev, M. A. L. Nicolelis, J. G. Harris, and J. C. Principe, "Ascertaining the importance of neurons to develop better brain-machine interfaces," IEEE Trans. Biomedical Engineering, vol. 51, no. 6, pp. 943-953, June 2004.
• J. M. Carmena and J. C. T. Hallam, "Narrowband target tracking using a biomimetic sonarhead," Robotics and Autonomous Systems, vol. 46, no. 4, pp. 247-259, April 2004.
• J. M. Carmena, M. A. Lebedev, R. E. Crist, J. E. O'Doherty, D. M. Santucci, D. F. Dimitrov, P. G. Patil, and C. S. Henriquez, "Learning to control a brain-machine interface for reaching and grasping by primates," PLoS Biology, vol. 1, no. 2, pp. 193-208, Nov. 2003.
• M. A. L. Nicolelis, D. F. Dimitrov, J. M. Carmena, R. Crist, G. Lehew, J. Kralik, and S. P. Wise, "Chronic, multisite, multielectrode recordings in macaque monkeys," PNAS, vol. 100, no. 19, pp. 11041-11046, Sep. 2003.
• J. M. Carmena, N. Kampchen, D. Kim, and J. C. T. Hallam, "Artificial ears for a biomimetic sonarhead: From multiple reflectors to surfaces," Artificial Life, vol. 7, no. 2, pp. 147-169, 2001.
• J. M. Carmena and J. C. T. Hallam, "Estimating Doppler shift using bat-inspired cochlear filter bank models: A comparison of methods for echoes from single and multiple reflectors," Adaptive Behavior, vol. 9, no. 3-4, pp. 241-261, July 2001.

Articles in conference proceedings

• M. M. Ghanbari, D. K. Piech, K. Shen, S. F. Alamouti, C. Yalcin, B. C. Johnson, J. M. Carmena, M. Maharbiz, and R. Muller, "17.5 A 0.8 mm 3 Ultrasonic Implantable Wireless Neural Recording System With Linear AM Backscattering," in 2019 IEEE International Solid-State Circuits Conference-(ISSCC), 2019, pp. 284--286.
• R. Muller, H. Le, W. Li, P. Ledochowitsch, S. Gambini, T. Bjorninen, A. Koralek, J. M. Carmena, M. Maharbiz, E. Alon, and J. M. Rabaey, "A miniaturized 64-channel 225uW wireless electrocorticographic neural sensor," in Solid-State Circuits Conference Digest of Technical Papers (ISSCC), 2014 IEEE International, 2014, pp. 412--413.
• A. Bertrand, D. Seo, F. Maksimovic, J. M. Carmena, M. Maharbiz, E. Alon, and J. M. Rabaey, "Beamforming approaches for untethered, ultrasonic neural dust motes for cortical recording: a simulation study," in Proc. Int. Conf. of the IEEE Engineering in Medicine and Biology Society (EMBC), Chicago, Illinois, USA, 2014.
• P. Chu, R. Muller, A. Koralek, J. M. Carmena, J. M. Rabaey, and S. Gambini, "Equalization for intracortical microstimulation artifact reduction," in Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE, 2013, pp. 245--248.
• P. Ledochowitsch, A. Koralek, D. Moses, J. M. Carmena, and M. Maharbiz, "Sub-mm functional decoupling of electrocortical signals through closed-loop BMI learning," in Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE, 2013, pp. 5622--5625.
• R. Heliot, A. Osborne, and J. M. Carmena, "Stiffness control of 2-DOF exoskeleton for brain-machine interfaces," in Proc. 2nd IEEE/RAS-EMBS Intl. Conf. on Biomedical Robotics and Biomechatronics (BIO.ROB 2008), Piscataway, NJ: IEEE Press, 2008.
• J. M. Rabaey, J. M. Carmena, B. Knight, D. Chen, M. Mark, R. S. Muller, S. Gambini, and S. Venkatraman, "Microscopic Wireless to Power Brain-Machine Interfaces (Keynote Address)," in Proc. CMOS Emerging Technologies Workshop, 2008.
• K. Ganguly, E. B. Torres, J. V. Jose, and J. M. Carmena, "From multiple neural cortical networks to motor mechanical behavior: The importance of inherent learning over separable space-time length scales (Poster Presentation)," in Proc. 17th Annual Computational Neuroscience Meeting (CNS 2008), London, UK: BioMed Central Ltd., 2008, pp. 1 pg.
• J. M. Carmena, "Towards cortical control of wearable neuroprostheses," in Proc. IEEE 2008 Intl. Conf. on Robotics and Automation (ICRA '08) Workshop on Wearable Robots, Piscataway, NJ: IEEE Press, 2008.
• J. D. Long, S. Venkatraman, and J. M. Carmena, "A platform for studying the effects of plasticity upon the learning of intracortical microstimulation induced percepts," in Proc. 37th Annual Meeting of the Society for Neuroscience (Neuroscience 2007), Washington, DC: Society for Neuroscience, 2007.
• S. Venkatraman, J. D. Long, and J. M. Carmena, "Electrochemical constraints for intracortical microstimulation used in neuroprosthetic applications," in Proc. 37th Annual Meeting of the Society for Neuroscience (Neuroscience 2007), Washington, DC: Society for Neuroscience, 2007.
• S. Venkatraman, J. D. Long, K. Pister, and J. M. Carmena, "Wireless inertial sensors for monitoring animal behavior," in Proc. 29th Annual Intl. Conf. of the IEEE Engineering in Medicine and Biology Society (EMBS 2007), Piscataway, NJ: IEEE Press, 2007, pp. 378-381.
• Y. N. Rao, S. P. Kim, J. C. Sanchez, D. Erdogmus, J. M. Carmena, J. M. Lebedev, and M. A. Nicolelis, "Learning mappings in brain machine interfaces with echo state networks," in Proc. 2005 IEEE Intl. Conf. on Acoustics, Speech and Signal Processing (ICASSP '05), Vol. 5, Piscataway, NJ: IEEE Press, 2005, pp. 233-236.
• S. P. Kim, J. M. Carmena, M. A. Nicolelis, and J. C. Principe, "Multiresolution representations and data mining of neural spikes for brain-machine interfaces," in Proc. 2nd IEEE Intl. EMBS Conf. on Neural Engineering (Neural Engineering 2005), Piscataway, NJ: IEEE Press, 2005, pp. 221-224.
• J. C. Sanchez, J. C. Principe, J. M. Carmena, M. A. Lebedev, and M. A. L. Nicolelis, "Simultaneous prediction of four kinematic variables for a brain-machine interface using a single recurrent neural network," in Proc. 26th Annual Intl. Conf. of the IEEE EMBS, Vol. 7, Piscataway, NJ: IEEE Press, 2004, pp. 5321-5324.
• J. M. Carmena and J. C. T. Hallam, "Narrowband 3D tracking using a biomimetic sonarhead," in Proc. 2002 IEEE/RSJ Intl. Conf. on Intelligent Robots and Systems (IROS '02), Vol. 1, Piscataway, NJ: IEEE Press, 2002, pp. 172-177.
• J. M. Carmena and J. C. T. Hallam, "Exploiting the physics: Towards Doppler-based navigation with a bat-inspired mobile robot," in Proc. 9th Intl. Symp. on Intelligent Robotic Systems (SIRS 2001), Toulouse, France: LAAS-CNRS, 2001, pp. 10 pg.
• J. M. Carmena and J. C. T. Hallam, "Estimating Doppler shift with a coarse cochlear filterbank," in Proc. 2000 IEEE/RSJ Intl. Conf. on Intelligent Robots and Systems (IROS '00), Vol. 1, Piscataway, NJ: IEEE Press, 2000, pp. 221-226.