Biosystems & Computational Biology (BIO)

Overview

Modern biology is increasingly reliant on the algorithmic and conceptual tools of computer science and electrical engineering. A major factor is the unprecedented growth in the size and scope of biological data sets, including multi-species genomic data, databases of polymorphic variants, databases of protein structure and RNA structure, gene expression data, biochemical measurements from large-scale gene knockout experiments and biomedical data. Representing, manipulating and integrating such data requires an appreciation of ideas from diverse areas of EECS such as databases, algorithms, artificial intelligence, graphics, signal processing and image processing. Reasoning about the underlying phenomena that give rise to such data require the systems-level thinking that is the underpinning of areas such as control theory, information theory and statistical machine learning. Ideas from circuit design and nanotechnology play key roles in the design of new biological sensors and actuators. Students in EECS who work on biological problems obtain a cross-disciplinary education in EECS and biology, and often play key roles in collaborative research projects involving biology faculty and students. It is also important to note that the research efforts in biosystems and computational biology in EECS are part of a larger, campus-wide initiative in computational biology. Indeed, many EECS faculty are members of the Center for Computational Biology (CCB). For information on the Center and additional course offerings, please visit http://qb3.berkeley.edu/ccb/. All courses listed on the CCB website are open to all interested students meeting the prerequisites regardless of departmental affiliations.

Topics

  • Neural systems

    Sensory motor control. Vision. Audition. Biomimetics. Brain-machine interfaces. Computational neuroscience.

  • Biomedical systems

    Sensors. Healthcare systems. Physiological modeling. Medical imaging and bioimage analysis.

  • Medical imaging and instrumentation

Research Centers

Faculty

Primary

Secondary

Faculty Awards

  • National Medal of Science: Richard M. Karp, 1996.
  • ACM A.M. Turing Award: Richard M. Karp, 1985.
  • SIAM John von Neumann Lecture Prize: Bernd Sturmfels, 2010. Richard M. Karp, 1987.
  • Harvey Prize: Richard M. Karp, 1998.
  • Kyoto Prize: Richard M. Karp, 2008.
  • MacArthur Fellow: Claire Tomlin, 2006.
  • National Academy of Sciences (NAS) Member: Jitendra Malik, 2015. Michael Jordan, 2010. Christos Papadimitriou, 2009. Richard M. Karp, 1980.
  • National Academy of Engineering (NAE) Member: Katherine A. Yelick, 2017. Jitendra Malik, 2011. Michael Jordan, 2010. Christos Papadimitriou, 2002. Ruzena Bajcsy, 1997. Thomas F. Budinger, 1996. Richard M. Karp, 1992.
  • American Academy of Arts and Sciences Member: Katherine A. Yelick, 2017. Robert Full, 2016. Jitendra Malik, 2013. Michael Jordan, 2010. Ruzena Bajcsy, 2007. Christos Papadimitriou, 1990. Richard M. Karp, 1980.
  • Berkeley Citation: Jerome A. Feldman, 2009. Thomas F. Budinger, 2004. Edwin R. Lewis, 1997.
  • UC Berkeley Distinguished Teaching Award: Robert Full, 1996. Richard M. Karp, 1986. Edwin R. Lewis, 1972.
  • Sloan Research Fellow: Nir Yosef, 2016. Michael Lustig, 2013. Jose M. Carmena, 2009. Yun S. Song, 2008. Jack Gallant, 1998. Bernd Sturmfels, 1991.

Related Courses